How do you cite blast+?
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How do you cite blast+?
For the command-line version of NCBI BLAST, and for details of the BLAST method, you would cite: Camacho C. et al. (2009) “BLAST+: architecture and applications”
How do I cite NCBI protein database?
To acknowledge NCBI services in your writing, you can refer to (1) publications that NCBI staff publishes in peer-reviewed journals or (2) to the NCBI web site (internet) and individual services/records within the site.
What is a BLAST file?
BLAST databases are constructed from concatenated FASTA formatted sequences using a program called “formatdb” that produces a mixture of binary- and ascii-encoded files containing the sequences and indexing information used during the BLAST search.
How do you cite geo datasets?
The original paper (if available) is listed under the ‘Citation’ section of the Series and DataSet records. Examples: “Smith et al., 2006, recently performed microarray experiments investigating effect of compound X on neurons (data accessible at NCBI GEO database (Edgar et al., 2002), accession GSExxx).”
What is a good BLAST score?
Blast hits with E-value smaller than 0.01 can still be considered as good hit for homology matches. E-value smaller than 10 will include hits that cannot be considered as significant, but may give an idea of potential relations.
What does BLAST score mean?
BLAST uses statistical theory to produce a bit score and expect value (E-value) for each alignment pair (query to hit). The bit score gives an indication of how good the alignment is; the higher the score, the better the alignment.
How do I open a BLAST file?
If you cannot open your BLAST file correctly, try to right-click or long-press the file. Then click “Open with” and choose an application. You can also display a BLAST file directly in the browser: Just drag the file onto this browser window and drop it.
Why is BLAST used?
BLAST is a powerful tool used to search a database of DNA or protein sequences in order to find “hits” that are similar to a query sequence. BLAST is used for several purposes, including inferring the possible function of a protein.
How do you cite GIS in APA?
For all printed cartographic work, you will need to know the following: the author of the map, the title of the map, format in brackets (e.g. map, software, GIS data) the edition of the map (if available), the scale of the map, place of publication, the publishers, and the date.
How do I cite from PubMed?
Get PubMed References into a Citation Management Software
- Select a record in PubMed.
- Select and choose the ‘Send to’ pull down menu.
- Select ‘File’
- Under ‘Format’ select ‘Medline’
- Select ‘Create File’
- Save the file as . txt.
- Open citation management software (Ex: EndNote, RefWorks, or Reference Manager)
- Select ‘File Import’
How do I cite a PubMed article?
To reference a MedGenMed article, following the www.icmje.org and www.PubMed.gov system, list the author or authors…the title of the article…the journal’s name…the year of publication…the month and date….the volume…the number…and the pages.
How do I open a NCBI file?
To do this, follow the steps below:
- Make sure the Search Tool in the Search View says: Search NCBI Public Databases.
- Select Gene for the NCBI Database.
- Enter the gene name superoxide dismutase in the search box located to the right from the Select NCBI Database drop-down list.
How do I find an article on NCBI?
Click Journals in NCBI Databases on the PubMed homepage. Enter the journal name and click Search.
